Stem-loop tca-mir-750

Accession

MI0016358

Description

Tribolium castaneum tca-mir-750 precursor miRNA

Literature search

3 open access papers mention tca-mir-750
(5 sentences)

Sequence

3436995 reads, 30209.0 reads per million, 34 experiments

agaaagcaaagggcccuuGGGUGGAAGGUUGGAUCUUCGCAugauucaaguugCCAGAUCUAACUCUUCCAUAUGAcggucauuugccaaca
.....(((((.((((.(((.((((((((((((((((..(((..........))).))))))))).))))))).))).)))).))))).....

Structure

agaaa     g    c   G       -         UC   ugau 
     gcaaa ggcc uuG GUGGAAG GUUGGAUCU  GCA    u
     ||||| |||| ||| ||||||| |||||||||  |||     
     cguuu cugg AGU UACCUUC CAAUCUAGA  Cgu    c
acaac     a    c   A       U         -C   ugaa 

Annotation confidence High

Genome context

ref|NC_007419.2|: 9452237-9452328 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-750

Mature tca-miR-750-5p

• Accession: MIMAT0018820
• Description: Tribolium castaneum tca-miR-750-5p mature miRNA
• Sequence: 19 - GGGUGGAAGGUUGGAUCUUCGCA - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-750-3p

• Accession: MIMAT0018821
• Description: Tribolium castaneum tca-miR-750-3p mature miRNA
• Sequence: 54 - CCAGAUCUAACUCUUCCAUAUGA - 76
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696