miRBase entry: tca-mir-3874

Stem-loop tca-mir-3874


Accession
MI0016368
Description
Tribolium castaneum tca-mir-3874 precursor miRNA


Sequence

agcaaguggcagauuggcugaugGAUGCUGUCAUAAUAAGGGacucgacacugguucagauaagagcaaacacacgcaaaacuuaucgugggauaaauCGCCUCAUUGACGACUUAUccgaagcggaucgauugcacacaca
.....((((((((((.(((..((((((..(((.((((.(((....(((......((((((((((.((........))....)))))).)))).....)))))).))))..))).)))))).))).))))...))).)))...

Structure
agcaa   -   ---    g   ga      CU   -A    A   Gacu   cacugg    -      ---a  aaa 
     gug gca   gauu gcu  ugGAUG  GUC  UAAU AGG    cga      uuca gauaag    gc   c
     ||| |||   |||| |||  ||||||  |||  |||| |||    |||      |||| ||||||    ||    
     cac cgu   cuag cga  gccUAU  CAG  GUUA UCC    GCu      gggu cuauuc    cg   a
--aca   a   uag    g   -a      -U   CA    C   ----   -aaaua    g      aaaa  cac 


Annotation confidence Not enough data
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Genome context
ChLG8: 3432758-3432899 [-]

Database links

Mature tca-miR-3874-5p

Accession MIMAT0018840
Description Tribolium castaneum tca-miR-3874-5p mature miRNA
Sequence 24 - GAUGCUGUCAUAAUAAGGG - 42
Evidence experimental
SOLID [1]

Mature tca-miR-3874-3p

Accession MIMAT0018841
Description Tribolium castaneum tca-miR-3874-3p mature miRNA
Sequence 99 - CGCCUCAUUGACGACUUAU - 117
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696