Stem-loop tca-mir-3817

Accession

MI0016275

Description

Tribolium castaneum tca-mir-3817 precursor miRNA

Sequence

7506 reads, 83.0 reads per million, 33 experiments

uccaagguugcugcgagauaacuggggccaguuuCGGGGUGUGGGAGUGGUAUUAUUuuuuuaaagUAAUAUUGCUCACUACACCUCCAaauuggucuugguacuucaaccgacua
.....(((((....(((...((((((((((((((.((((((((((((((((((((((((...))))))))))))))).))))))))).)))))))))))))).)))))))).....

Structure

uccaa     cugc   aua              C         -               u 
     gguug    gag   acuggggccaguuu GGGGUGUGG GAGUGGUAUUAUUuu  
     |||||    |||   |||||||||||||| ||||||||| ||||||||||||||| u
     ccaac    uuc   ugguucugguuaaA CUCCACAUC CUCGUUAUAAUgaaa  
aucag     ----   --a              C         A               u 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6595414-6595529 [+]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-3817

Mature tca-miR-3817-5p

• Accession: MIMAT0018658
• Description: Tribolium castaneum tca-miR-3817-5p mature miRNA
• Sequence: 35 - CGGGGUGUGGGAGUGGUAUUAUU - 57
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3817-3p

• Accession: MIMAT0018659
• Description: Tribolium castaneum tca-miR-3817-3p mature miRNA
• Sequence: 67 - UAAUAUUGCUCACUACACCUCCA - 89
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696