Stem-loop tca-mir-3833

Accession

MI0016295

Description

Tribolium castaneum tca-mir-3833 precursor miRNA

Sequence

1177 reads, 22.0 reads per million, 20 experiments

uuuuguuaguuuuaaCGGCAAGUCACAGCAGGCuguuauggaaaucacaguaacagccuuccugaagcUUGCAAGAGAAAAUUGAACUGU
.....((((((((....((((((..(((.((((((((((.(......).))))))))))..)))..)))))).....)))))))).....

Structure

uuuug        -aaCG      CA   -C          g aa 
     uuaguuuu     GCAAGU  CAG  AGGCuguuau g  a
     ||||||||     ||||||  |||  |||||||||| |   
     AGUUAAAA     CGUUcg  guc  uccgacaaug c  u
UGUCA        GAGAA      aa   cu          a ac 

Annotation confidence Low

Genome context

ref|NC_007417.3|: 3817611-3817700 [+]

Mature tca-miR-3833-5p

• Accession: MIMAT0018696
• Description: Tribolium castaneum tca-miR-3833-5p mature miRNA
• Sequence: 16 - CGGCAAGUCACAGCAGGC - 33
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3833-3p

• Accession: MIMAT0018697
• Description: Tribolium castaneum tca-miR-3833-3p mature miRNA
• Sequence: 69 - UUGCAAGAGAAAAUUGAACUGU - 90
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696