Stem-loop tca-mir-3890

Accession

MI0016387

Description

Tribolium castaneum tca-mir-3890 precursor miRNA

Sequence

cacccuguaguuauaacaugggaucgaaaauauacugaauuagaGCAGCUGUAUCUGCGGAACuuuaguuacauuuuAGCCGGUUAUGUACGGCUGcacuuuuaaaguuauguugucuuauguugguuuuacacacau
.....(((((...(((((((((((....((((((((.....((.((((((((((...(((..((..(((...)))..))))).....)))))))))).)).....)).)))))))))))))))))...))))).....

Structure

caccc     uua           cgaa      -  gaauu  a          --CUG   AA  uu   u 
     uguag   uaacaugggau    aauaua cu     ag GCAGCUGUAU     CGG  Cu  agu  
     |||||   |||||||||||    |||||| ||     || ||||||||||     |||  ||  ||| a
     acauu   guuguauucug    uuguau ga     uc cGUCGGCAUG     GCC  GA  uua  
uacac     uug           ----      u  aauuu  a          UAUUG   --  uu   c 

Annotation confidence Not enough data

Genome context

ChLG3: 17788978-17789115 [-]

Mature tca-miR-3890-5p

• Accession: MIMAT0018878
• Description: Tribolium castaneum tca-miR-3890-5p mature miRNA
• Sequence: 45 - GCAGCUGUAUCUGCGGAAC - 63
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3890-3p

• Accession: MIMAT0018879
• Description: Tribolium castaneum tca-miR-3890-3p mature miRNA
• Sequence: 78 - AGCCGGUUAUGUACGGCUG - 96
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696