Stem-loop tca-mir-13b

Accession

MI0008902

Description

Tribolium castaneum tca-mir-13b precursor miRNA

Literature search

2 open access papers mention tca-mir-13b
(3 sentences)

Sequence

568191 reads, 4561.0 reads per million, 34 experiments

ugcccuauCAGUCAAUUUGGUUGUGAAACCUaguauuuauucgggUAUCACAGCCAUUUUGACGAGUUugguug
.(((..((..(((((..(((((((((.(((((((....))).)))).)))))))))..)))))..))..)))..

Structure

-u   cu  CA     UU         A    -   a 
  gcc  au  GUCAA  UGGUUGUGA ACCU agu u
  |||  ||  |||||  ||||||||| |||| |||  
  ugg  UG  CAGUU  ACCGACACU Uggg uua u
gu   uU  AG     UU         A    c   u 

Annotation confidence High

Genome context

ref|NC_007418.3|: 561058-561131 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-13b

Mature tca-miR-13b-5p

• Accession: MIMAT0019104
• Description: Tribolium castaneum tca-miR-13b-5p mature miRNA
• Sequence: 9 - CAGUCAAUUUGGUUGUGAAACCU - 31
• Evidence: experimental ; SOLID [2]

Mature tca-miR-13b-3p

• Accession: MIMAT0008360
• Description: Tribolium castaneum tca-miR-13b-3p mature miRNA
• Sequence: 46 - UAUCACAGCCAUUUUGACGAGUU - 68
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696