Stem-loop tca-mir-252a

Accession

MI0016350

Description

Tribolium castaneum tca-mir-252a precursor miRNA

Literature search

2 open access papers mention tca-mir-252a
(7 sentences)

Sequence

374287 reads, 2506.0 reads per million, 34 experiments

aaagacuguccuguuaCUAAGUACUAGUGCCGCAGGAguacauucgaccuCCUGCUGCUCAAGUGCUUAUCAaugggcacagaauga
.....((((((((((..((((((((.(.((.(((((((..(....)..))))))).)).).))))))))..)))))).)))).....

Structure

aaaga    -      aC        A U  C       ua a 
     cugu ccuguu  UAAGUACU G GC GCAGGAg  c u
     |||| ||||||  |||||||| | || |||||||  |  
     gaca ggguaA  AUUCGUGA C CG CGUCCuc  g u
aguaa    c      CU        A U  U       ca c 

Annotation confidence Medium

Genome context

ref|NC_007424.3|: 7058357-7058443 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-252a

Mature tca-miR-252a-5p

• Accession: MIMAT0018804
• Description: Tribolium castaneum tca-miR-252a-5p mature miRNA
• Sequence: 17 - CUAAGUACUAGUGCCGCAGGA - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-252a-3p

• Accession: MIMAT0018805
• Description: Tribolium castaneum tca-miR-252a-3p mature miRNA
• Sequence: 51 - CCUGCUGCUCAAGUGCUUAUCA - 72
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696