Stem-loop tca-mir-3807

Accession

MI0016264

Description

Tribolium castaneum tca-mir-3807 precursor miRNA

Sequence

27230 reads, 668.0 reads per million, 33 experiments

auuaauaauuaauucgggcgAUGGCGAUGAUGUGCGGCcaaaucgaaauucugaaaucauUUGCCGAACAUCCUCGCCACUAuccaguuaauuacaagc
.....(((((((((.(((...((((((.(((((.((((.((((.((..........)))))))))).))))).))))))...)))))))))))).....

Structure

auuaa         c   cgA      U     G    c    c  aauu 
     uaauuaauu ggg   UGGCGA GAUGU CGGC aaau ga    c
     ||||||||| |||   |||||| ||||| |||| |||| ||     
     auuaauuga ccu   ACCGCU CUACA GCCG UUua cu    u
cgaac         -   AUC      C     A    -    -  aaag 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6593554-6593652 [+]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-3807

Mature tca-miR-3807-5p

• Accession: MIMAT0018636
• Description: Tribolium castaneum tca-miR-3807-5p mature miRNA
• Sequence: 21 - AUGGCGAUGAUGUGCGGC - 38
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3807-3p

• Accession: MIMAT0018637
• Description: Tribolium castaneum tca-miR-3807-3p mature miRNA
• Sequence: 61 - UUGCCGAACAUCCUCGCCACUA - 82
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696