Stem-loop tca-mir-3811a-1

Accession

MI0016289

Description

Tribolium castaneum tca-mir-3811a-1 precursor miRNA

Sequence

4125 reads, 28.0 reads per million, 29 experiments

uuuauccaauucucaggaUUCUUGCUCAGAGUUUACAUAUUuugguuuaaauaugaaaUAUGUACAACCGUGAGUGGAGACcuggggguuggucagu
.....((((((((((((.((((.(((((..((((((((((((((.........))))))))))).)))..))))))))).)))))))))))).....

Structure

uuuau            a    U     GA   -           guu 
     ccaauucucagg UUCU GCUCA  GUU UACAUAUUuug   u
     |||||||||||| |||| |||||  ||| |||||||||||   a
     gguugggggucC GAGG UGAGU  CAA AUGUAUaaagu   a
ugacu            A    -     GC   C           aua 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6596424-6596520 [+]

Clustered miRNAs

33 other miRNAs are < 10 kb from tca-mir-3811a-1

Mature tca-miR-3811a-1-5p

• Accession: MIMAT0018684
• Description: Tribolium castaneum tca-miR-3811a-1-5p mature miRNA
• Sequence: 19 - UUCUUGCUCAGAGUUUACAUAUU - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3811a-3p

• Accession: MIMAT0018645
• Description: Tribolium castaneum tca-miR-3811a-3p mature miRNA
• Sequence: 59 - UAUGUACAACCGUGAGUGGAGAC - 81
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696