Stem-loop tca-mir-92b

Accession

MI0008910

Description

Tribolium castaneum tca-mir-92b precursor miRNA

Literature search

1 open access papers mention tca-mir-92b
(7 sentences)

Sequence

cugugucguuuAGGUCGUGUCUUGUGCAACUUGugguuuuuucauuagucaaAUUGCACUUGUCCCGGCCUGcaaggcacag
(((((((...(((((((.(.(..((((((((.((((.....)))).))).....)))))..).).)))))))...)))))))

Structure

       guu       U U UU     -----   U    u 
cuguguc   uAGGUCG G C  GUGCA     ACU Gugg u
|||||||   ||||||| | |  |||||     ||| |||| u
gacacgg   GUCCGGC C G  CACGU     uga uacu u
       aac       C U UU     UAaac   u    u 

Annotation confidence Not enough data

Genome context

ChLG8: 2516719-2516800 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-92b

Mature tca-miR-92b-3p

• Accession: MIMAT0008368
• Description: Tribolium castaneum tca-miR-92b-3p mature miRNA
• Sequence: 53 - AUUGCACUUGUCCCGGCCUG - 72
• Evidence: experimental ; SOLID [2]

Mature tca-miR-92b-5p

• Accession: MIMAT0019112
• Description: Tribolium castaneum tca-miR-92b-5p mature miRNA
• Sequence: 12 - AGGUCGUGUCUUGUGCAACUUG - 33
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696