Stem-loop tca-mir-1175

Accession

MI0016357

Description

Tribolium castaneum tca-mir-1175 precursor miRNA

Literature search

0 open access papers mention tca-mir-1175
(0 sentences)

Sequence

cgcuuugaucgagcucuguaaaguAAGUGGAGCAGUGGUCUCUUCACuugguuuuuauagUGAGAUUCAACUCCUCCAUCUCauuuuuugagcucguuuacaacg
.....(((.(((((((...(((((.(((((((.(((.(..(((.((((..........)))))))..).))).))))).)).)))))..))))))).))).....

Structure

cgcuu   u       ugu     A  -     C   G UC   U    uggu 
     uga cgagcuc   aaagu AG UGGAG AGU G  UCU CACu    u
     ||| |||||||   ||||| || ||||| ||| |  ||| ||||     
     auu gcucgag   uuuua UC ACCUC UCA C  AGA GUga    u
gcaac   u       -uu     C  U     C   A UU   -    uauu 

Annotation confidence Not enough data

Genome context

ChLG4: 9316972-9317076 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-1175

Mature tca-miR-1175-5p

• Accession: MIMAT0018818
• Description: Tribolium castaneum tca-miR-1175-5p mature miRNA
• Sequence: 25 - AAGUGGAGCAGUGGUCUCUUCAC - 47
• Evidence: experimental ; SOLID [1]

Mature tca-miR-1175-3p

• Accession: MIMAT0018819
• Description: Tribolium castaneum tca-miR-1175-3p mature miRNA
• Sequence: 61 - UGAGAUUCAACUCCUCCAUCUC - 82
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696