Stem-loop tca-mir-3836b

Accession

MI0016302

Description

Tribolium castaneum tca-mir-3836b precursor miRNA

Sequence

33214 reads, 2302.0 reads per million, 34 experiments

uuuuugaaaugucugccAGGUCCACCUCUGCUUAAGUUGAUauuuauuuaauuaUCACUGGGCAAGGUAGACUCUacagccguuucuucaa
.....((((((.(((...((((.((((.((((((.((.((((..........)))))))))))))))).))))...))).)))))).....

Structure

uuuuu      u   ccA    C    C      A  U    uuua 
     gaaaug cug   GGUC ACCU UGCUUA GU GAUa    u
     |||||| |||   |||| |||| |||||| || ||||     
     cuuugc gac   UCAG UGGA ACGGGU CA CUau    u
aacuu      c   aUC    A    -      -  -    uaau 

Annotation confidence High

Genome context

ref|NC_007417.3|: 1150375-1150465 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from tca-mir-3836b

Mature tca-miR-3836b-5p

• Accession: MIMAT0018710
• Description: Tribolium castaneum tca-miR-3836b-5p mature miRNA
• Sequence: 18 - AGGUCCACCUCUGCUUAAGUUGAU - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3836b-3p

• Accession: MIMAT0018711
• Description: Tribolium castaneum tca-miR-3836b-3p mature miRNA
• Sequence: 55 - UCACUGGGCAAGGUAGACUCU - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696