Stem-loop tca-mir-3880

Accession

MI0016376

Description

Tribolium castaneum tca-mir-3880 precursor miRNA

Sequence

cuucauugggUCCAAGAAACGAAAGAAUUCGgcgauuuuuguccucugagucuuagguuccgggaauugagauUGCGACUUCCGUCGAUGUUGUCCUGAaauac
.....(((((..(((.(..(((..(((.(((.(((((((.((.(((.(((.(....)))).))).)).)))))))))).)))..))).).))).))))).....

Structure

cuuca     UC   G AA   AA   U   g       u  c   u   u u 
     uuggg  CAA A  CGA  GAA UCG cgauuuu gu cuc gag c u
     |||||  ||| |  |||  ||| ||| ||||||| || ||| ||| |  
     AGUCC  GUU U  GCU  CUU AGC GUuagag ua ggg cuu g a
cauaa     -U   G -A   GC   C   -       u  a   c   - g 

Annotation confidence Not enough data

Genome context

Unmapped36: 42421-42524 [+]

Mature tca-miR-3880-5p

• Accession: MIMAT0018856
• Description: Tribolium castaneum tca-miR-3880-5p mature miRNA
• Sequence: 11 - UCCAAGAAACGAAAGAAUUCG - 31
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3880-3p

• Accession: MIMAT0018857
• Description: Tribolium castaneum tca-miR-3880-3p mature miRNA
• Sequence: 74 - UGCGACUUCCGUCGAUGUUGUCCUGA - 99
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696