Stem-loop tca-mir-3880

Accession

MI0016376

Description

Tribolium castaneum tca-mir-3880 precursor miRNA

Sequence

7432 reads, 663.0 reads per million, 34 experiments

cuucauuggguccaagaaacgaaagaauucggcgauUUUUGUCCUCUGAGUCUUAGGUUCCGGgaauugagauUGCGACUUCCGUCGAUGUUGUCCugaaauac
.....(((((..(((.(..(((..(((.(((.(((((((.((.(((.(((.(....)))).))).)).)))))))))).)))..))).).))).))))).....

Structure

cuuca     uc   g aa   aa   u   g       U  C   U   U U 
     uuggg  caa a  cga  gaa ucg cgauUUU GU CUC GAG C U
     |||||  ||| |  |||  ||| ||| ||||||| || ||| ||| |  
     aguCC  GUU U  GCU  CUU AGC GUuagag ua gGG CUU G A
cauaa     -U   G -A   GC   C   -       u  a   C   - G 

Annotation confidence Low

Genome context

ref|NW_015450733.1|: 46024-46127 [-]

Mature tca-miR-3880-5p

• Accession: MIMAT0018856
• Description: Tribolium castaneum tca-miR-3880-5p mature miRNA
• Sequence: 37 - UUUUGUCCUCUGAGUCUUAGGUUCCGG - 63
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3880-3p

• Accession: MIMAT0018857
• Description: Tribolium castaneum tca-miR-3880-3p mature miRNA
• Sequence: 74 - UGCGACUUCCGUCGAUGUUGUCC - 96
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696