Stem-loop tca-mir-276

Accession

MI0008922

Description

Tribolium castaneum tca-mir-276 precursor miRNA

Literature search

5 open access papers mention tca-mir-276
(9 sentences)

Sequence

16061038 reads, 83871.0 reads per million, 34 experiments

uagaccacuAGCGAGGUAUAGAGUUCCUACGugauuuuucggcugUAGGAACUUCAUACCGUGCUCUugga
....(((..((((.(((((.((((((((((((((....)))..))))))))))).))))).))))..))).

Structure

uaga   cu    A     A           --   u 
    cca  AGCG GGUAU GAGUUCCUACG  uga u
    |||  |||| ||||| |||||||||||  |||  
    ggu  UCGU CCAUA UUCAAGGAUgu  gcu u
---a   UC    G     C           cg   u 

Annotation confidence High

Genome context

ref|NC_007418.3|: 12483934-12484004 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-276

Mature tca-miR-276-5p

• Accession: MIMAT0008380
• Description: Tribolium castaneum tca-miR-276-5p mature miRNA
• Sequence: 10 - AGCGAGGUAUAGAGUUCCUACG - 31
• Evidence: experimental ; SOLID [2]

Mature tca-miR-276-3p

• Accession: MIMAT0008381
• Description: Tribolium castaneum tca-miR-276-3p mature miRNA
• Sequence: 46 - UAGGAACUUCAUACCGUGCUCU - 67
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696