Stem-loop tca-mir-iab-4

Accession

MI0008933

Description

Tribolium castaneum tca-mir-iab-4 precursor miRNA

Sequence

uuaaacccccuguACGUAUACUGAAUGUAUCCUGAguguuuucugucCGGUAUACCUUCAGUAUACGUAACaggaggccac
.....((.(((((((((((((((((.((((((.((..(....)..)).)).)))).)))))))))))).))))).))....

Structure

uuaaa  c     -            U    -  U  gu u 
     cc ccugu ACGUAUACUGAA GUAU CC GA  g u
     || ||||| |||||||||||| |||| || ||  |  
     gg ggaCA UGCAUAUGACUU CAUA GG cu  c u
-cacc  a     A            C    U  C  gu u 

Annotation confidence Not enough data

Genome context

ChLG2: 7614308-7614388 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-iab-4

Mature tca-miR-iab-4-5p

• Accession: MIMAT0008393
• Description: Tribolium castaneum tca-miR-iab-4-5p mature miRNA
• Sequence: 14 - ACGUAUACUGAAUGUAUCCUGA - 35
• Evidence: experimental ; SOLID [3]

Mature tca-miR-iab-4-3p

• Accession: MIMAT0008394
• Description: Tribolium castaneum tca-miR-iab-4-3p mature miRNA
• Sequence: 48 - CGGUAUACCUUCAGUAUACGUAAC - 71
• Evidence: experimental ; SOLID [3]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 18392875
   Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters
   "Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE"
   "Dev Genes Evol (2008) 218:127-139


3. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696