Stem-loop tca-mir-3843

Accession

MI0016313

Description

Tribolium castaneum tca-mir-3843 precursor miRNA

Sequence

uguggcugacaaguuuucAGUUGUUGAUGUGGCUUUAGUGgagauuuuacugaaUUAAAGCUAUGUCAGCAAUUAaaaaaaugucgggucuu
.....((((((..((((.(((((((((((((((((((((..((......))..))))))))))))))))))))).))))..)))))).....

Structure

ugugg      ag    c                     Gg  au 
     cugaca  uuuu AGUUGUUGAUGUGGCUUUAGU  ag  u
     ||||||  |||| |||||||||||||||||||||  ||   
     ggcugu  aaaa UUAACGACUGUAUCGAAAUUa  uc  u
uucug      aa    A                     ag  au 

Annotation confidence Not enough data

Genome context

ChLG3: 15204456-15204547 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-3843

Mature tca-miR-3843-5p

• Accession: MIMAT0018732
• Description: Tribolium castaneum tca-miR-3843-5p mature miRNA
• Sequence: 19 - AGUUGUUGAUGUGGCUUUAGUG - 40
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3843-3p

• Accession: MIMAT0018733
• Description: Tribolium castaneum tca-miR-3843-3p mature miRNA
• Sequence: 55 - UUAAAGCUAUGUCAGCAAUUA - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696