Stem-loop tca-mir-3820

Accession

MI0016280

Description

Tribolium castaneum tca-mir-3820 precursor miRNA

Sequence

aaaaauugugugcaauuuCUUGCCAAGCCGUUACAGCauuuuauauuuaagaaauCCUGUACAGGUUUUGCAAUAaaauugugcacgaacauu
.....(((((((((((((.((((.(((((..(((((.(((((........))))).)))))..))))).))))..))))))))))))).....

Structure

aaaaa             -C    C     GU     C     aua 
     uugugugcaauuu  UUGC AAGCC  UACAG auuuu   u
     |||||||||||||  |||| |||||  ||||| |||||    
     agcacguguuaaa  AACG UUUGG  AUGUC uaaag   u
uuaca             AU    U     AC     C     aau 

Annotation confidence Not enough data

Genome context

ChLGX: 5794461-5794553 [-]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3820

Mature tca-miR-3820-5p

• Accession: MIMAT0018666
• Description: Tribolium castaneum tca-miR-3820-5p mature miRNA
• Sequence: 19 - CUUGCCAAGCCGUUACAGC - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3820-3p

• Accession: MIMAT0018667
• Description: Tribolium castaneum tca-miR-3820-3p mature miRNA
• Sequence: 56 - CCUGUACAGGUUUUGCAAUA - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696