Stem-loop tca-mir-3820

Accession

MI0016280

Description

Tribolium castaneum tca-mir-3820 precursor miRNA

Sequence

1791 reads, 47.0 reads per million, 24 experiments

aaaaauugugugcaauuuCUUGCCAAGCCGUUACAGCauuuuauauuuaagaaaUCCUGUACAGGUUUUGCAAUAaaauugugcacgaacauu
.....(((((((((((((.((((.(((((..(((((.(((((........))))).)))))..))))).))))..))))))))))))).....

Structure

aaaaa             -C    C     GU     C     aua 
     uugugugcaauuu  UUGC AAGCC  UACAG auuuu   u
     |||||||||||||  |||| |||||  ||||| |||||    
     agcacguguuaaa  AACG UUUGG  AUGUC Uaaag   u
uuaca             AU    U     AC     C     aau 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6587607-6587699 [+]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3820

Mature tca-miR-3820-5p

• Accession: MIMAT0018666
• Description: Tribolium castaneum tca-miR-3820-5p mature miRNA
• Sequence: 19 - CUUGCCAAGCCGUUACAGC - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3820-3p

• Accession: MIMAT0018667
• Description: Tribolium castaneum tca-miR-3820-3p mature miRNA
• Sequence: 55 - UCCUGUACAGGUUUUGCAAUA - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696