Stem-loop tca-mir-3838

Accession

MI0016307

Description

Tribolium castaneum tca-mir-3838 precursor miRNA

Sequence

656 reads, 185.0 reads per million, 20 experiments

acagagauauucgcgcaaaguuagaggUUUAGCCUAAGUCGUCUUAAUAAAAUGUUUuuaauaauugagaaaauuuuaaauguucuaacauUUUGAGUCCGAUCCUGUCUACCUGCCGcuuugugaugaaggcuucaaaau
...(((...((((((((((((...((((..((.(...((((.(((((...((((((...((((.((((((...)))))).))))..)))))))))))..))))...).))))))...)))))))).))))...))).....

Structure

--aca   aua    -        uag    UU  C UAA    -U     UAA      Uuu    a      a 
     gag   uucg cgcaaagu   aggU  AG C   GUCG  CUUAA   AAUGUU   aaua uugaga  
     |||   |||| ||||||||   ||||  || |   ||||  |||||   ||||||   |||| |||||| a
     cuu   aagu guguuucG   UCCA  UC G   UAGC  GAGUU   Uuacaa   uugu aauuuu  
uaaaa   cgg    a        CCG    --  U UCC    CU     ---      -uc    a      a 

Annotation confidence Low

Genome context

ref|NC_007418.3|: 15547861-15548001 [+]

Mature tca-miR-3838-5p

• Accession: MIMAT0018720
• Description: Tribolium castaneum tca-miR-3838-5p mature miRNA
• Sequence: 28 - UUUAGCCUAAGUCGUCUUAAUAAAAUGUUU - 57
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3838-3p

• Accession: MIMAT0018721
• Description: Tribolium castaneum tca-miR-3838-3p mature miRNA
• Sequence: 92 - UUUGAGUCCGAUCCUGUCUACCUGCCG - 118
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696