Stem-loop tca-mir-2944a

Accession

MI0016306

Description

Tribolium castaneum tca-mir-2944a precursor miRNA

Sequence

204926 reads, 3537.0 reads per million, 34 experiments

aacucgcugaaacugugGAGGAACUAUUGGUGUGAUUUGuucauuuaaucaUAUCACAGCCAUUAGUUACUUCAcaguuucaguauuuu
.....(((((((((((((((..((((.(((((((((.((..........)).)))))).))).))))..))))))))))))))).....

Structure

aacuc               GA    U   -      U  uuca 
     gcugaaacugugGAG  ACUA UGG UGUGAU UG    u
     |||||||||||||||  |||| ||| |||||| ||     
     ugacuuugacACUUC  UGAU ACC ACACUA ac    u
uuuua               AU    U   G      U  uaau 

Annotation confidence High

Genome context

ref|NC_007418.3|: 15689921-15690009 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-2944a

Mature tca-miR-2944a-5p

• Accession: MIMAT0018718
• Description: Tribolium castaneum tca-miR-2944a-5p mature miRNA
• Sequence: 18 - GAGGAACUAUUGGUGUGAUUUG - 39
• Evidence: experimental ; SOLID [1]

Mature tca-miR-2944a-3p

• Accession: MIMAT0018719
• Description: Tribolium castaneum tca-miR-2944a-3p mature miRNA
• Sequence: 52 - UAUCACAGCCAUUAGUUACUUCA - 74
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696