Stem-loop tca-mir-6010

Accession

MI0020221

Description

Tribolium castaneum tca-mir-6010 precursor miRNA

Sequence

auuuuuugcaGUUUGUUUUUGUCGCCUUUUaggcacuuggcguauuuuaacaaguagcugUAAGGGUGCUCGACUUGUAaaucaa
....(((((((...(((...(.(((((((..((((((((...........))))).)))..))))))))..))))))))))....

Structure

auuu       UUU   UUU U       Ua   -     gcgu 
    uuugcaG   GUU   G CGCCUUU  ggc acuug    a
    |||||||   |||   | |||||||  ||| |||||    u
    aaAUGUU   CAG   C GUGGGAA  ucg ugaac    u
aacu       ---   -CU -       Ug   a     aauu 

Annotation confidence Not enough data

Genome context

ChLG2: 9062069-9062153 [+]

Mature tca-miR-6010-5p

• Accession: MIMAT0023561
• Description: Tribolium castaneum tca-miR-6010-5p mature miRNA
• Sequence: 11 - GUUUGUUUUUGUCGCCUUUU - 30
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6010-3p

• Accession: MIMAT0023562
• Description: Tribolium castaneum tca-miR-6010-3p mature miRNA
• Sequence: 61 - UAAGGGUGCUCGACUUGUA - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323