Stem-loop tca-mir-2944c

Accession

MI0016353

Description

Tribolium castaneum tca-mir-2944c precursor miRNA

Sequence

733498 reads, 6057.0 reads per million, 34 experiments

gccgagcgacacucagggaaucuggcuuGAAGGAACUUCUGGUGUGAUAUGuauuuaucaauaUAUCACAGCCAGUAGUUACCUACGAaauggguucccgauugcaacag
.....((((...((.(((((((((..(((.(((((((.((((((((((((((........)))))))))).)))).)))).))).)))..))))))))))))))).....

Structure

gccga    cac  a         gc   A   -    U    -          auu 
     gcga   uc gggaaucug  uuG AGG AACU CUGG UGUGAUAUGu   u
     ||||   || |||||||||  ||| ||| |||| |||| ||||||||||    
     cguu   ag cccuugggu  AGC UCC UUGA GACC ACACUAUaua   a
gacaa    ---  -         aa   A   A    U    G          acu 

Annotation confidence High

Genome context

ref|NC_007424.3|: 10955-11064 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-2944c

Mature tca-miR-2944c-5p

• Accession: MIMAT0018810
• Description: Tribolium castaneum tca-miR-2944c-5p mature miRNA
• Sequence: 29 - GAAGGAACUUCUGGUGUGAUAUG - 51
• Evidence: experimental ; SOLID [1]

Mature tca-miR-2944c-3p

• Accession: MIMAT0018811
• Description: Tribolium castaneum tca-miR-2944c-3p mature miRNA
• Sequence: 64 - UAUCACAGCCAGUAGUUACCUACGA - 88
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696