Stem-loop tca-mir-3859

Accession

MI0016343

Description

Tribolium castaneum tca-mir-3859 precursor miRNA

Sequence

565 reads, 19.0 reads per million, 16 experiments

caCACCCCACACAUUUAAGCcggccguuucaugucuuaaaaugaagaggUGUGCUCGUUGUGGGAACAU
.....((((((.((...(((..(((.((((((........)))))).)))..))).)))))))).....

Structure

caCAC      C  UUA   cg   g      guc 
     CCCACA AU   AGC  gcc uuucau   u
     |||||| ||   |||  ||| ||||||    
     GGGUGU UG   UCG  Ugg gaagua   u
UACAA      -  --C   UG   a      aaa 

Annotation confidence Medium

Genome context

ref|NC_007422.5|: 9860674-9860742 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3859

Mature tca-miR-3859-5p

• Accession: MIMAT0018790
• Description: Tribolium castaneum tca-miR-3859-5p mature miRNA
• Sequence: 3 - CACCCCACACAUUUAAGC - 20
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3859-3p

• Accession: MIMAT0018791
• Description: Tribolium castaneum tca-miR-3859-3p mature miRNA
• Sequence: 50 - UGUGCUCGUUGUGGGAACAU - 69
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696