miRBase entry: tca-mir-3859

Stem-loop tca-mir-3859


Accession
MI0016343
Description
Tribolium castaneum tca-mir-3859 precursor miRNA


Sequence

cacACCCCACACAUUUAAGCCggccguuucaugucuuaaaauGAAGAGGUGUGCUCGUUGUGGGaacau
.....((((((.((...(((..(((.((((((........)))))).)))..))).)))))))).....

Structure
cacAC      C  UUA   Cg   g      guc 
     CCCACA AU   AGC  gcc uuucau   u
     |||||| ||   |||  ||| ||||||    
     GGGUGU UG   UCG  UGG GAAGua   u
uacaa      -  --C   UG   A      aaa 


Annotation confidence Not enough data
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Genome context
ChLG7: 11854759-11854827 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-3859
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3859-5p

Accession MIMAT0018790
Description Tribolium castaneum tca-miR-3859-5p mature miRNA
Sequence 4 - ACCCCACACAUUUAAGCC - 21
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3859-3p

Accession MIMAT0018791
Description Tribolium castaneum tca-miR-3859-3p mature miRNA
Sequence 43 - GAAGAGGUGUGCUCGUUGUGGG - 64
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696