Stem-loop tca-mir-3823

Accession

MI0016283

Description

Tribolium castaneum tca-mir-3823 precursor miRNA

Sequence

aauuuugugucuuguuuAAAGGUCGUGGUUUUGGCAUUuugcuguugaaaucaGUAUAUCAGACUACGGUCUuuggaugaggcucauuuuu
.....((.(((((((((((((((((((((((.((.....(((((.......)))))..))))))))))))))))))))))))).)).....

Structure

aauuu  u                       U  CAUUu     uu 
     ug gucuuguuuAAAGGUCGUGGUUU GG     ugcug  g
     || ||||||||||||||||||||||| ||     |||||  a
     ac cggaguagguuUCUGGCAUCAGA CU     AUGac  a
uuuuu  u                       -  ---AU     ua 

Annotation confidence Not enough data

Genome context

ChLGX: 5781595-5781685 [-]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3823

Mature tca-miR-3823-5p

• Accession: MIMAT0018672
• Description: Tribolium castaneum tca-miR-3823-5p mature miRNA
• Sequence: 18 - AAAGGUCGUGGUUUUGGCAUU - 38
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3823-3p

• Accession: MIMAT0018673
• Description: Tribolium castaneum tca-miR-3823-3p mature miRNA
• Sequence: 54 - GUAUAUCAGACUACGGUCU - 72
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696