Stem-loop tca-mir-309b

Accession

MI0016391

Description

Tribolium castaneum tca-mir-309b precursor miRNA

Literature search

2 open access papers mention tca-mir-309b
(14 sentences)

Sequence

173132 reads, 7687.0 reads per million, 34 experiments

cauuugcccaucacaucuCGACUAACUCGAUUCAGUUGAUGUuaauuagauaUCACUGGGUUGAGUUUGUCUCGauguuuugugcccauc
.....((.((..(((((..(((.(((((((((((((.((((((.....))))))))))))))))))).)))..)))))..)).)).....

Structure

cauuu  c  uc     uC   U             U      a 
     gc ca  acauc  GAC AACUCGAUUCAGU GAUGUu a
     || ||  |||||  ||| ||||||||||||| |||||| u
     cg gu  uguaG  CUG UUGAGUUGGGUCA CUauag u
cuacc  u  uu     CU   U             -      a 

Annotation confidence High

Genome context

ref|NC_007420.3|: 7457435-7457524 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-309b

Mature tca-miR-309b-5p

• Accession: MIMAT0018886
• Description: Tribolium castaneum tca-miR-309b-5p mature miRNA
• Sequence: 19 - CGACUAACUCGAUUCAGUUGAUGU - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-309b-3p

• Accession: MIMAT0018887
• Description: Tribolium castaneum tca-miR-309b-3p mature miRNA
• Sequence: 53 - UCACUGGGUUGAGUUUGUCUCG - 74
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696