Stem-loop tca-mir-3814

Accession

MI0016272

Description

Tribolium castaneum tca-mir-3814 precursor miRNA

Sequence

7554 reads, 102.0 reads per million, 33 experiments

uucucuuuguugaaaguuUACAAUUUAGCGCUCUAUucuaguuaaauuuuacacUAGCAUGAGCGUUUGUUGUAGAuuuuuggcaaaaauuu
.....(((((((((((((((((((..(((((((.((.(((((..........))))).))))))))).))))))))))))))))))).....

Structure

uucuc                   UU       U  u     uaaa 
     uuuguugaaaguuUACAAU  AGCGCUC AU cuagu    u
     |||||||||||||||||||  ||||||| || |||||     
     aaacgguuuuuAGAUGUUG  UUGCGAG UA GAUca    u
uuuaa                   -U       -  C     cauu 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6587937-6588028 [+]

Clustered miRNAs

30 other miRNAs are < 10 kb from tca-mir-3814

Mature tca-miR-3814-5p

• Accession: MIMAT0018652
• Description: Tribolium castaneum tca-miR-3814-5p mature miRNA
• Sequence: 19 - UACAAUUUAGCGCUCUAU - 36
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3814-3p

• Accession: MIMAT0018653
• Description: Tribolium castaneum tca-miR-3814-3p mature miRNA
• Sequence: 55 - UAGCAUGAGCGUUUGUUGUAGA - 76
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696