Stem-loop tca-mir-3813

Accession

MI0016270

Description

Tribolium castaneum tca-mir-3813 precursor miRNA

Sequence

20532 reads, 148.0 reads per million, 33 experiments

uuuaaguguugcaaauuUUUAUUCUGCUCUUUUCGACGUuuuaaaauuugaaaAACGUCGAAGGAGUCAGGAUAAaaauuuuugacacaaauc
.....((((((.((((((((((((((((((((.(((((((((.........))))))))))))))).)))))))))))))).)))))).....

Structure

uuuaa      c              -      U         aaa 
     guguug aaauuUUUAUUCUG CUCUUU CGACGUuuu   a
     |||||| |||||||||||||| |||||| |||||||||   u
     cacagu uuuaaaAAUAGGAC GAGGAA GCUGCAAaa   u
cuaaa      u              U      -         agu 

Annotation confidence Medium

Genome context

ref|NC_007416.3|: 6587381-6587473 [+]

Clustered miRNAs

26 other miRNAs are < 10 kb from tca-mir-3813

Mature tca-miR-3813-5p

• Accession: MIMAT0018648
• Description: Tribolium castaneum tca-miR-3813-5p mature miRNA
• Sequence: 18 - UUUAUUCUGCUCUUUUCGACGU - 39
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3813-3p

• Accession: MIMAT0018649
• Description: Tribolium castaneum tca-miR-3813-3p mature miRNA
• Sequence: 54 - AACGUCGAAGGAGUCAGGAUAA - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696