Stem-loop tca-mir-6013

Accession

MI0020224

Description

Tribolium castaneum tca-mir-6013 precursor miRNA

Sequence

gcucaGGCGUCGUCCAAAGCGCUCCaggaagcgcaagccgaggugaaGCUGCUGACGACCGCCUUGca
((..((((((((((...((((((.((....((....)).....)).))).)))))))).))))).)).

Structure

-  uc     -     CAA   -   C  -ggaa  g 
 gc  aGGCG UCGUC   AGC GCU Ca     gc c
 ||  ||||| |||||   ||| ||| ||     ||  
 cG  UCCGC AGCAG   UCG CGa gu     cg a
a  -U     C     ---   U   a  ggagc  a 

Annotation confidence Low

Genome context

ChLG4: 11065727-11065794 [-]

Mature tca-miR-6013-5p

• Accession: MIMAT0023567
• Description: Tribolium castaneum tca-miR-6013-5p mature miRNA
• Sequence: 6 - GGCGUCGUCCAAAGCGCUCC - 25
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6013-3p

• Accession: MIMAT0023568
• Description: Tribolium castaneum tca-miR-6013-3p mature miRNA
• Sequence: 48 - GCUGCUGACGACCGCCUUG - 66
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323