Stem-loop tca-mir-3846

Accession

MI0016317

Description

Tribolium castaneum tca-mir-3846 precursor miRNA

Sequence

2874 reads, 87.0 reads per million, 33 experiments

ggaaUAGAGUUACUUCCAUUGAUGAUAGUaaauguucuuggcuuauaagucuuugugucaagaauauUGACCACAAUUACGUUGCCUcaaucaucgacgucaucaacugacauggcaacuaauucuccaau
(((...((((((.(((((((((((((.((..(((.....(((......((..(((((((((.....)))).)))))..))...))).....)))..)))))))))......)))).)).)))))))))...

Structure

---   aUA      C  -    ------       A  aa   uucuu   uuauaa  cu     -    g 
   gga   GAGUUA UU CCAU      UGAUGAU GU  aug     ggc      gu  uugug ucaa a
   |||   |||||| || ||||      ||||||| ||  |||     |||      ||  ||||| |||| a
   ccu   cuuaau aa ggua      acuacug ca  uac     CCG      CA  AACAC AGUu u
uaa   ---      c  c    caguca       -  gc   uaacU   ---UUG  UU     C    a 

Annotation confidence Medium

Genome context

ref|NC_007418.3|: 16145945-16146075 [-]

Mature tca-miR-3846-5p

• Accession: MIMAT0018740
• Description: Tribolium castaneum tca-miR-3846-5p mature miRNA
• Sequence: 5 - UAGAGUUACUUCCAUUGAUGAUAGU - 29
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3846-3p

• Accession: MIMAT0018741
• Description: Tribolium castaneum tca-miR-3846-3p mature miRNA
• Sequence: 68 - UGACCACAAUUACGUUGCCU - 87
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696