Stem-loop tca-mir-13a

Accession

MI0008901

Description

Tribolium castaneum tca-mir-13a precursor miRNA

Literature search

3 open access papers mention tca-mir-13a
(5 sentences)

Sequence

259905 reads, 2285.0 reads per million, 34 experiments

gagaugcccaagUCGUCAAUUUGGUUGUGAACUcuuaauuuaaacgaUAUCACAGCCACUUUGAUGAGCUugguugucuu
((((((.((((((((((((..(((((((((..((...........))..)))))))))..))))))).))))).))))))

Structure

      c     -       UU         AC  uuaa 
gagaug ccaag UCGUCAA  UGGUUGUGA  Uc    u
|||||| ||||| |||||||  |||||||||  ||    u
uucugu gguUC AGUAGUU  ACCGACACU  ag    u
      u     G       UC         AU  caaa 

Annotation confidence High

Genome context

ref|NC_007418.3|: 560942-561021 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-13a

Mature tca-miR-13a-5p

• Accession: MIMAT0019103
• Description: Tribolium castaneum tca-miR-13a-5p mature miRNA
• Sequence: 13 - UCGUCAAUUUGGUUGUGAACU - 33
• Evidence: experimental ; SOLID [2]

Mature tca-miR-13a-3p

• Accession: MIMAT0008359
• Description: Tribolium castaneum tca-miR-13a-3p mature miRNA
• Sequence: 48 - UAUCACAGCCACUUUGAUGAGCU - 70
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696