Stem-loop tca-mir-252b

Accession

MI0016351

Description

Tribolium castaneum tca-mir-252b precursor miRNA

Literature search

3 open access papers mention tca-mir-252b
(9 sentences)

Sequence

196079 reads, 1192.0 reads per million, 34 experiments

gccucuuguccacccgguaUUAAGUAGUUGCGCCGAAGGUGAuguuuuugaaaucUCCUCGGUCUGGCUGCUUUAUAccgcauggaugaaaauc
.....(((((((..((((((.(((((((((.(((((.((.(((.........))).))))))).))))))))).))))))..))))))).....

Structure

gccuc       cc      U         C     A  U   guu 
     uugucca  cgguaU AAGUAGUUG GCCGA GG GAu   u
     |||||||  |||||| ||||||||| ||||| || |||   u
     aguaggu  gccAUA UUCGUCGGU UGGCU CC cua   u
cuaaa       ac      U         C     -  U   aag 

Annotation confidence High

Genome context

ref|NC_007424.3|: 7050442-7050535 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-252b

Mature tca-miR-252b-5p

• Accession: MIMAT0018806
• Description: Tribolium castaneum tca-miR-252b-5p mature miRNA
• Sequence: 20 - UUAAGUAGUUGCGCCGAAGGUGA - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-252b-3p

• Accession: MIMAT0018807
• Description: Tribolium castaneum tca-miR-252b-3p mature miRNA
• Sequence: 56 - UCCUCGGUCUGGCUGCUUUAUA - 77
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696