Stem-loop tca-mir-3851d-1

Accession

MI0016337

Description

Tribolium castaneum tca-mir-3851d-1 precursor miRNA

Sequence

aauuaaauuuaauauugAGUGGACAUGGGGUGGUACUGUguaauuuuugacccaUAGUACGGCCCAUGUUGGCUCaguaauaaauuacauu
.....((((((.((((((((.((((((((.(.((((((((............)))))))).))))))))).)))))))).)))))).....

Structure

aauua      a        G        G G        uaauu 
     aauuua uauugAGU GACAUGGG U GUACUGUg     u
     |||||| |||||||| |||||||| | ||||||||      
     uuaaau augaCUCG UUGUACCC G CAUGAUac     u
uuaca      a        G        - G        ccagu 

Annotation confidence Not enough data

Genome context

ChLG6: 8819480-8819570 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-3851d-1

Mature tca-miR-3851d-3p

• Accession: MIMAT0018779
• Description: Tribolium castaneum tca-miR-3851d-3p mature miRNA
• Sequence: 55 - UAGUACGGCCCAUGUUGGCUC - 75
• Evidence: experimental ; Illumina [2]

Mature tca-miR-3851d-5p

• Accession: MIMAT0037388
• Description: Tribolium castaneum tca-miR-3851d-5p mature miRNA
• Sequence: 18 - AGUGGACAUGGGGUGGUACUGU - 39
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 26518483
   MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "Genome Res (2016) 26:85-96