Stem-loop tca-mir-927a

Accession

MI0008931

Description

Tribolium castaneum tca-mir-927a precursor miRNA

Sequence

95967 reads, 840.0 reads per million, 33 experiments

uuucggUUUAGAAUUCCUACGCUUUACCgugugaaaggcuggCAAAGCGUUUGGAUUCUGAAUCgaac
.(((((((((((((((..(((((((.(((.((.....))))).)))))))..))))))))))))))).

Structure

u               CU       A   u  g 
 uucggUUUAGAAUUC  ACGCUUU CCg gu a
 |||||||||||||||  ||||||| ||| || a
 aagCUAAGUCUUAGG  UGCGAAA ggu cg a
c               UU       C   -  g 

Annotation confidence High

Genome context

ref|NC_007424.3|: 12073268-12073335 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-927a

Mature tca-miR-927a-5p

• Accession: MIMAT0008391
• Description: Tribolium castaneum tca-miR-927a-5p mature miRNA
• Sequence: 7 - UUUAGAAUUCCUACGCUUUACC - 28
• Evidence: experimental ; SOLID [2]

Mature tca-miR-927a-3p

• Accession: MIMAT0019131
• Description: Tribolium castaneum tca-miR-927a-3p mature miRNA
• Sequence: 43 - CAAAGCGUUUGGAUUCUGAAUC - 64
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696