Stem-loop tca-mir-279b

Accession

MI0010587

Description

Tribolium castaneum tca-mir-279b precursor miRNA

Literature search

2 open access papers mention tca-mir-279b
(8 sentences)

Sequence

gguaguuauccuaaaguuuuuGAUGGGUGAGGGUUUGGUGCAUGuuuuauuuuaaucaUGACUAGAUCCACACUCAUCCAaaaauuuggugu
((.......))..((((((((((((((((.(((((((((.((((.((......)).))))))))))))).))))))).))))))))).....

Structure

gguaguuauccua         -       A         G    u  ua 
             aaguuuuuG AUGGGUG GGGUUUGGU CAUG uu  u
             ||||||||| ||||||| ||||||||| |||| ||   
             uuuaaaaAC UACUCAC CCUAGAUCA GUac aa  u
--------ugugg         C       A         -    u  uu 

Annotation confidence Not enough data

Genome context

ChLG5: 297455-297546 [-]

Mature tca-miR-279b-3p

• Accession: MIMAT0010201
• Description: Tribolium castaneum tca-miR-279b-3p mature miRNA
• Sequence: 59 - UGACUAGAUCCACACUCAUCCA - 80
• Evidence: experimental ; SOLID [1]

Mature tca-miR-279b-5p

• Accession: MIMAT0019181
• Description: Tribolium castaneum tca-miR-279b-5p mature miRNA
• Sequence: 22 - GAUGGGUGAGGGUUUGGUGCAUG - 44
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696