Stem-loop tca-mir-190

Accession

MI0008917

Description

Tribolium castaneum tca-mir-190 precursor miRNA

Literature search

2 open access papers mention tca-mir-190
(3 sentences)

Sequence

211069 reads, 1302.0 reads per million, 34 experiments

gugaguugcuauaAGAUAUGUUUGAUAUUCUUGGUUGuauuuuuaauucaCCCAGGAGUCAAACAUAUUAUUAuagaagcgucacg
(((((((.((((((((((((((((((..((((((.((...........)).)))))))))))))))))).)))))).))).)))).

Structure

-    -   g      -            AU      U  uauu 
 guga guu cuauaA GAUAUGUUUGAU  UCUUGG UG    u
 |||| ||| |||||| ||||||||||||  |||||| ||    u
 cacu cga gauAUU UUAUACAAACUG  AGGACC ac    u
g    g   a      A            --      C  uuaa 

Annotation confidence High

Genome context

ref|NC_007422.5|: 945885-945970 [+]

Mature tca-miR-190-5p

• Accession: MIMAT0008375
• Description: Tribolium castaneum tca-miR-190-5p mature miRNA
• Sequence: 14 - AGAUAUGUUUGAUAUUCUUGGUUG - 37
• Evidence: experimental ; SOLID [2]

Mature tca-miR-190-3p

• Accession: MIMAT0019119
• Description: Tribolium castaneum tca-miR-190-3p mature miRNA
• Sequence: 51 - CCCAGGAGUCAAACAUAUUAUUA - 73
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696