Stem-loop tca-mir-124

Accession

MI0008912

Description

Tribolium castaneum tca-mir-124 precursor miRNA

Literature search

6 open access papers mention tca-mir-124
(9 sentences)

Sequence

27684 reads, 4323.0 reads per million, 29 experiments

gucauucuccuAGUGUUCACUGUUGGCCUGUAUGUuuuuguaacgcaUAAGGCACGCGGUGAAUGCCAAgagcagacuu
(((...(((...(((((((((((..((((.(((((.........)))))))))..)))))))))))...)))..)))..

Structure

--   auu   cuA           UG    G     uuu 
  guc   cuc   GUGUUCACUGU  GCCU UAUGU   u
  |||   |||   |||||||||||  |||| |||||   g
  cag   gag   CGUAAGUGGCG  CGGA AUacg   u
uu   -ac   AAC           CA    -     caa 

Annotation confidence High

Genome context

ref|NC_007420.3|: 13734448-13734526 [-]

Mature tca-miR-124-5p

• Accession: MIMAT0019114
• Description: Tribolium castaneum tca-miR-124-5p mature miRNA
• Sequence: 12 - AGUGUUCACUGUUGGCCUGUAUGU - 35
• Evidence: experimental ; SOLID [2]

Mature tca-miR-124-3p

• Accession: MIMAT0008370
• Description: Tribolium castaneum tca-miR-124-3p mature miRNA
• Sequence: 48 - UAAGGCACGCGGUGAAUGCCAA - 69
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696