Stem-loop tca-mir-3836a

Accession

MI0016299

Description

Tribolium castaneum tca-mir-3836a precursor miRNA

Sequence

20329 reads, 1615.0 reads per million, 34 experiments

uuuuugaaaugucugucAGGUCUACCUCUGCUUAAGUUaauauuuauuuaauuaUCACUGGGCAAGGUAGACUUUAcagccguuucuucaa
.....((((((.((((.((((((((((.((((((((((((.......)))))).....)))))))))))))))).)))).)))))).....

Structure

uuuuu      u    c          C      -----      ua 
     gaaaug cugu AGGUCUACCU UGCUUA     AGUUaa  u
     |||||| |||| |||||||||| ||||||     ||||||  u
     cuuugc gacA UUCAGAUGGA ACGGGU     uuaauu  u
aacuu      c    U          -      CACUa      ua 

Annotation confidence High

Genome context

ref|NC_007417.3|: 374188-374278 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-3836a

Mature tca-miR-3836a-5p

• Accession: MIMAT0018704
• Description: Tribolium castaneum tca-miR-3836a-5p mature miRNA
• Sequence: 18 - AGGUCUACCUCUGCUUAAGUU - 38
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3836a-3p

• Accession: MIMAT0018705
• Description: Tribolium castaneum tca-miR-3836a-3p mature miRNA
• Sequence: 55 - UCACUGGGCAAGGUAGACUUUA - 76
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696