Stem-loop tca-mir-9d

Accession

MI0016321

Description

Tribolium castaneum tca-mir-9d precursor miRNA

Literature search

2 open access papers mention tca-mir-9d
(4 sentences)

Sequence

24041 reads, 835.0 reads per million, 34 experiments

aauacgucuacuuuauauuUCUUUGGUGAUCUAACUUAUGAUuaacuuuauaagucAUAAAGCUAGAUUCACCAAAGAAauaugugguuggca
.....(((.(((.((((((((((((((((((((.(((((((((.........)))))).))).)))).)))))))))))))))).))).))).

Structure

aauac   u   u                -    A   -      aac 
     guc acu uauauuUCUUUGGUGA UCUA CUU AUGAUu   u
     ||| ||| |||||||||||||||| |||| ||| ||||||   u
     cgg ugg guauaAAGAAACCACU AGAU GAA UAcuga   u
----a   u   u                U    C   A      aua 

Annotation confidence High

Genome context

ref|NC_007420.3|: 7455709-7455801 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-9d

Mature tca-miR-9d-5p

• Accession: MIMAT0018748
• Description: Tribolium castaneum tca-miR-9d-5p mature miRNA
• Sequence: 20 - UCUUUGGUGAUCUAACUUAUGAU - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-9d-3p

• Accession: MIMAT0018749
• Description: Tribolium castaneum tca-miR-9d-3p mature miRNA
• Sequence: 57 - AUAAAGCUAGAUUCACCAAAGAA - 79
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696