Stem-loop tca-mir-3893

Accession

MI0016392

Description

Tribolium castaneum tca-mir-3893 precursor miRNA

Sequence

93851 reads, 3777.0 reads per million, 34 experiments

gguuuuauuuuuCCGAUGUUACGACGGCUUUACAUGAaauuugaaucAUAAAGCUGUCAGUAACGUGGACaaauauuacu
(((..(((((.(((.(((((((((((((((((..(((........))))))))))))).)))))))))).)))))..)))

Structure

   uu     u   G       -          CA   aau 
ggu  uauuu uCC AUGUUAC GACGGCUUUA  UGA   u
|||  ||||| ||| ||||||| ||||||||||  |||    
uca  auaaa AGG UGCAAUG CUGUCGAAAU  Acu   u
   uu     C   -       A          --   aag 

Annotation confidence High

Genome context

ref|NC_007420.3|: 7457223-7457302 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-3893

Mature tca-miR-3893-5p

• Accession: MIMAT0018888
• Description: Tribolium castaneum tca-miR-3893-5p mature miRNA
• Sequence: 13 - CCGAUGUUACGACGGCUUUACAUGA - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3893-3p

• Accession: MIMAT0018889
• Description: Tribolium castaneum tca-miR-3893-3p mature miRNA
• Sequence: 48 - AUAAAGCUGUCAGUAACGUGGAC - 70
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696