Stem-loop tca-mir-316

Accession

MI0016305

Description

Tribolium castaneum tca-mir-316 precursor miRNA

Literature search

2 open access papers mention tca-mir-316
(3 sentences)

Sequence

69049 reads, 639.0 reads per million, 34 experiments

gccacacuugugaacgUGUCUUUUUCCGCUUUGCUGccgcuguucugucgucgCCAGCAGAGAGGAUGAGGCUAGugcacgaguugacc
..((.(((((((.((..(((((..(((.((((((((.((.((......)).)).)))))))).))).)))))..)).)))))))))...

Structure

-gc  c       a  gU     UU   G        c  c  uu 
   ca acuugug ac  GUCUU  UCC CUUUGCUG cg ug  c
   || ||||||| ||  |||||  ||| |||||||| || ||   
   gu ugagcac uG  CGGAG  AGG GAGACGAC gc gc  u
cca  -       g  AU     -U   A        C  u  ug 

Annotation confidence High

Genome context

ref|NC_007418.3|: 998656-998744 [+]

Mature tca-miR-316-5p

• Accession: MIMAT0018716
• Description: Tribolium castaneum tca-miR-316-5p mature miRNA
• Sequence: 17 - UGUCUUUUUCCGCUUUGCUG - 36
• Evidence: experimental ; SOLID [1]

Mature tca-miR-316-3p

• Accession: MIMAT0018717
• Description: Tribolium castaneum tca-miR-316-3p mature miRNA
• Sequence: 54 - CCAGCAGAGAGGAUGAGGCUAG - 75
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696