Stem-loop tca-let-7

Accession

MI0008896

Description

Tribolium castaneum tca-let-7 precursor miRNA

Literature search

22 open access papers mention tca-let-7
(61 sentences)

Sequence

642084 reads, 5289.0 reads per million, 34 experiments

gucuguuUGAGGUAGUAGGUUGUAUAGUAaguauuacaccuauugggagugCUGUACAGCCUGCUAACUUUCCcagac
(((((...(((.(((((((((((((((((.........((....))...))))))))))))))))).)))...)))))

Structure

     uuU   G                 aguauuaca  u 
gucug   GAG UAGUAGGUUGUAUAGUA         cc a
|||||   ||| |||||||||||||||||         ||  
cagac   UUC AUCGUCCGACAUGUCgu         gg u
     CCU   A                 ------gag  u 

Annotation confidence High

Genome context

ref|NC_007421.3|: 4363419-4363496 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-let-7

Mature tca-let-7-5p

• Accession: MIMAT0008354
• Description: Tribolium castaneum tca-let-7-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUAUAGUA - 29
• Evidence: experimental ; SOLID [2]

Mature tca-let-7-3p

• Accession: MIMAT0019098
• Description: Tribolium castaneum tca-let-7-3p mature miRNA
• Sequence: 52 - CUGUACAGCCUGCUAACUUUCC - 73
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696