Stem-loop tca-mir-279c

Accession

MI0016312

Description

Tribolium castaneum tca-mir-279c precursor miRNA

Literature search

2 open access papers mention tca-mir-279c
(8 sentences)

Sequence

uuucgccgcuuaaauucauauuuuuuuCGGGUGUUCGUUUCGAGUCACAuugugauugauuuugUGACUAGAUCGAACAUUCGCUCGaaguauggaaaaauccgcgggacuu
..((.((((.....((((((((((...((((((((((..((.(((((((..((.....))..))))))).)).))))))))))...)))))))))).......))))))...

Structure

-uu  g    --uuaaa          uuu          UU  G       uu  g 
   uc ccgc       uucauauuuu   CGGGUGUUCG  UC AGUCACA  gu a
   || ||||       ||||||||||   ||||||||||  || |||||||  || u
   ag ggcg       agguaugaaG   GCUUACAAGC  AG UCAGUgu  ua u
uuc  -    ccuaaaa          CUC          -U  A       uu  g 

Annotation confidence Not enough data

Genome context

ChLG3: 15204345-15204456 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-279c

Mature tca-miR-279c-5p

• Accession: MIMAT0018730
• Description: Tribolium castaneum tca-miR-279c-5p mature miRNA
• Sequence: 28 - CGGGUGUUCGUUUCGAGUCACA - 49
• Evidence: experimental ; SOLID [1]

Mature tca-miR-279c-3p

• Accession: MIMAT0018731
• Description: Tribolium castaneum tca-miR-279c-3p mature miRNA
• Sequence: 65 - UGACUAGAUCGAACAUUCGCUCG - 87
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696