Stem-loop tca-mir-279c

Accession

MI0016312

Description

Tribolium castaneum tca-mir-279c precursor miRNA

Literature search

2 open access papers mention tca-mir-279c
(8 sentences)

Sequence

8005411 reads, 112687.0 reads per million, 34 experiments

uuucgccgcuuaaauucauauuuuuuuCGGGUGUUCGUUUCGAGUCACAUugugauugauuuugUGACUAGAUCGAACAUUCGCUcgaaguauggaaaaauccgcgggacuu
..((.((((.....((((((((((...((((((((((..((.(((((((..((.....))..))))))).)).))))))))))...)))))))))).......))))))...

Structure

-uu  g    --uuaaa          uuu          UU  G       Uu  g 
   uc ccgc       uucauauuuu   CGGGUGUUCG  UC AGUCACA  gu a
   || ||||       ||||||||||   ||||||||||  || |||||||  || u
   ag ggcg       agguaugaag   GCUUACAAGC  AG UCAGUgu  ua u
uuc  -    ccuaaaa          cUC          -U  A       uu  g 

Annotation confidence High

Genome context

ref|NC_007418.3|: 15690042-15690153 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-279c

Mature tca-miR-279c-5p

• Accession: MIMAT0018730
• Description: Tribolium castaneum tca-miR-279c-5p mature miRNA
• Sequence: 28 - CGGGUGUUCGUUUCGAGUCACAU - 50
• Evidence: experimental ; SOLID [1]

Mature tca-miR-279c-3p

• Accession: MIMAT0018731
• Description: Tribolium castaneum tca-miR-279c-3p mature miRNA
• Sequence: 65 - UGACUAGAUCGAACAUUCGCU - 85
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696