Stem-loop tca-mir-3477

Accession

MI0016315

Description

Tribolium castaneum tca-mir-3477 precursor miRNA

Literature search

1 open access papers mention tca-mir-3477
(2 sentences)

Sequence

151523 reads, 1217.0 reads per million, 34 experiments

ugcacgcuugacugcguuucguUAAUCUCAUUUGGUAACUGUGAGguuuguuuauuccUCAGACUACUGAAUGGGAUCGAcaaaaugugguuuuguuuuca
.....((..((((((((((.(((.(((((((((((((..(.(((((..........))))).).))))))))))))).))).))))))))))..)).....

Structure

ugcac  uu          c   A             AC G     uuug 
     gc  gacugcguuu guU AUCUCAUUUGGUA  U UGAGg    u
     ||  |||||||||| ||| |||||||||||||  | |||||     
     ug  uugguguaaa cAG UAGGGUAAGUCAU  A ACUcc    u
acuuu  uu          a   C             -C G     uuau 

Annotation confidence High

Genome context

ref|NC_007418.3|: 21686264-21686364 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-3477

Mature tca-miR-3477-5p

• Accession: MIMAT0018736
• Description: Tribolium castaneum tca-miR-3477-5p mature miRNA
• Sequence: 23 - UAAUCUCAUUUGGUAACUGUGAG - 45
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3477-3p

• Accession: MIMAT0018737
• Description: Tribolium castaneum tca-miR-3477-3p mature miRNA
• Sequence: 59 - UCAGACUACUGAAUGGGAUCGA - 80
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696