Stem-loop tca-mir-3882

Accession

MI0016378

Description

Tribolium castaneum tca-mir-3882 precursor miRNA

Sequence

1601 reads, 307.0 reads per million, 29 experiments

ucuccgcacUUGACACAUCGGUGUUCUaccaugcaguuccucugugcguggaagaaucgcuaacaCCGAUGGCACUGAGCUGuuu
.....(((((((...((((((((((((.(((((((.........))))))).))).......)))))))))....)))).)))..

Structure

ucucc   -    -ACA         -------   a       guu 
     gca cUUG    CAUCGGUGU       UCU ccaugca   c
     ||| ||||    |||||||||       ||| |||||||   c
     uGU GAGU    GUAGCCaca       aga ggugcgu   u
---uu   C    CACG         aucgcua   a       guc 

Annotation confidence Medium

Genome context

ref|NW_015451896.1|: 14499-14583 [-]

Mature tca-miR-3882-5p

• Accession: MIMAT0018860
• Description: Tribolium castaneum tca-miR-3882-5p mature miRNA
• Sequence: 10 - UUGACACAUCGGUGUUCU - 27
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3882-3p

• Accession: MIMAT0018861
• Description: Tribolium castaneum tca-miR-3882-3p mature miRNA
• Sequence: 66 - CCGAUGGCACUGAGCUG - 82
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696