Stem-loop efu-mir-219

Accession

MI0028743

Description

Eptesicus fuscus efu-mir-219 precursor miRNA

Sequence

1328 reads, 18.0 reads per million, 8 experiments

ccgcggcuccUGAUUGUCCAAACGCAAUUCUCGagucuccggcucggccgAGAGUUGAGUCUGGACGUCCCGagccgccgcc
..(((((((..(((.(((((.((.(((((((((.(((........)))))))))))).)).))))))))..)))))))....

Structure

--cc       cU   U     A  G         a   ucc 
    gcggcuc  GAU GUCCA AC CAAUUCUCG guc   g
    |||||||  ||| ||||| || ||||||||| |||    
    cgccgaG  CUG CAGGU UG GUUGAGAgc cgg   g
ccgc       CC   -     C  A         -   cuc 

Annotation confidence High

Genome context

JH977876.1: 617749-617830 [-]

Mature efu-miR-219-5p

• Accession: MIMAT0035056
• Description: Eptesicus fuscus efu-miR-219-5p mature miRNA
• Sequence: 11 - UGAUUGUCCAAACGCAAUUCUCG - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-219-3p

• Accession: MIMAT0058839
• Description: Eptesicus fuscus efu-miR-219-3p mature miRNA
• Sequence: 51 - AGAGUUGAGUCUGGACGUCCCG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545