Stem-loop rno-mir-219a-2

Accession

MI0000960

Description

Rattus norvegicus rno-mir-219a-2 precursor miRNA

Literature search

31 open access papers mention rno-mir-219a-2
(237 sentences)

Sequence

232543 reads, 327.0 reads per million, 409 experiments

acucaggggcuucaccacUGAUUGUCCAAACGCAAUUCUUGuacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUgguugagcuccgg
.....(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).)))))))..

Structure

acuca       c     U   U     AA           uac a   u 
     ggggcuu accac GAU GUCCA  CGCAAUUCUUG   g guc  
     ||||||| ||||| ||| |||||  |||||||||||   | ||| g
     ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
---gg       u     U   -     CG           caa -   c 

Annotation confidence High

Genome context

chr3: 8407430-8407525 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-219a-2

Mature rno-miR-219a-2-5p

• Accession: MIMAT0061619
• Description: Rattus norvegicus rno-miR-219a-2-5p mature miRNA
• Sequence: 19 - UGAUUGUCCAAACGCAAUUCUUG - 41
• Evidence: experimental ; Illumina [1]

Mature rno-miR-219a-2-3p

• Accession: MIMAT0005446
• Description: Rattus norvegicus rno-miR-219a-2-3p mature miRNA
• Sequence: 62 - AGAAUUGUGGCUGGACAUCUGU - 83
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249