Stem-loop mdo-mir-219a

Accession

MI0005323

Description

Monodelphis domestica mdo-mir-219a precursor miRNA

Sequence

32124 reads, 633.0 reads per million, 5 experiments

cagggguuccgccgcUGAUUGUCCAAACGCAAUUCUUGugcgagucugcagccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagcucc
..(((((((.(((((.(((.(((((..(((((((((((((((....))))......)))))))))))..)))))))).))))).)))))))

Structure

ca       c     U   U     AA           ------    a 
  gggguuc gccgc GAU GUCCA  CGCAAUUCUUG      ugcg g
  ||||||| ||||| ||| |||||  |||||||||||      ||||  
  ccucgag cggUG CUA CAGGU  GUGUUAAGAgc      acgu u
--       u     U   -     CG           caaccg    c 

Annotation confidence High

Genome context

ref|NC_077227.1|: 461199788-461199878 [-]

Mature mdo-miR-219a-5p

• Accession: MIMAT0004134
• Description: Monodelphis domestica mdo-miR-219a-5p mature miRNA
• Sequence: 16 - UGAUUGUCCAAACGCAAUUCUUG - 38
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-219a-3p

• Accession: MIMAT0026681
• Description: Monodelphis domestica mdo-miR-219a-3p mature miRNA
• Sequence: 59 - AGAAUUGUGGCUGGACAUCUGU - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45