Stem-loop ssc-mir-219b

Accession

MI0031642

Description

Sus scrofa ssc-mir-219b precursor miRNA

Literature search

4 open access papers mention ssc-mir-219b
(6 sentences)

Sequence

786200 reads, 1417.0 reads per million, 181 experiments

ggcuucgccacUGAUUGUCCAAACGCAAUUCUUGuacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUggcugagc
.((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).))))

Structure

g    c     U   U     AA           uac a   u 
 gcuu gccac GAU GUCCA  CGCAAUUCUUG   g guc  
 |||| ||||| ||| |||||  |||||||||||   | ||| g
 cgag cggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
-    u     U   -     CG           caa -   c 

Annotation confidence High

Genome context

chr1: 302806853-302806936 [-]

Mature ssc-miR-219b-5p

• Accession: MIMAT0052710
• Description: Sus scrofa ssc-miR-219b-5p mature miRNA
• Sequence: 12 - UGAUUGUCCAAACGCAAUUCUUG - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-219b-3p

• Accession: MIMAT0037083
• Description: Sus scrofa ssc-miR-219b-3p mature miRNA
• Sequence: 55 - AGAAUUGUGGCUGGACAUCUGU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100