Stem-loop api-mir-219

Accession

MI0013917

Description

Acyrthosiphon pisum api-mir-219 precursor miRNA

Literature search

1 open access papers mention api-mir-219
(3 sentences)

Sequence

357 reads, 91.0 reads per million, 5 experiments

ucucaggcugUGAUUGUCCAAACGCAAUUCUUGuuaaacguauauaugcaaucaAGGAUUGAGUAGGGACGUCAACgcuugaga
((((((((..((((.((((..((.(((((((((.....(((....)))....))))))))).))..))))))))..))))))))

Structure

        ug    U    AA  G         uuaaa   a 
ucucaggc  UGAU GUCC  AC CAAUUCUUG     cgu u
||||||||  |||| ||||  || |||||||||     |||  
agaguucg  ACUG CAGG  UG GUUAGGAac     gua a
        CA    -    GA  A         -uaac   u 

Annotation confidence High

Genome context

GL350104.1: 328254-328337 [+]

Mature api-miR-219-5p

• Accession: MIMAT0014717
• Description: Acyrthosiphon pisum api-miR-219-5p mature miRNA
• Sequence: 11 - UGAUUGUCCAAACGCAAUUCUUG - 33
• Evidence: experimental ; Illumina [1]

Mature api-miR-219-3p

• Accession: MIMAT0057273
• Description: Acyrthosiphon pisum api-miR-219-3p mature miRNA
• Sequence: 55 - AGGAUUGAGUAGGGACGUCAAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281