Stem-loop mml-mir-219-1

Accession

MI0002884

Description

Macaca mulatta mml-mir-219-1 precursor miRNA mir-219

Gene
family

RF00251; mir-219

Literature search

2 open access papers mention mml-mir-219-1
(2 sentences)

Sequence

22918 reads, 31.0 reads per million, 131 experiments

ccgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUCGagucuauggcucuggccgAGAGUUGAGUCUGGACGUCCCGAgccgccgcccccaaaccucgaggggg
...((((((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))...........)))).

Structure

ccg    -----------    c       cU   U     A  G         a   uau 
   cccc           gggc gcggcuc  GAU GUCCA AC CAAUUCUCG guc   g
   ||||           |||| |||||||  ||| ||||| || ||||||||| |||   g
   gggg           cccg cgccgAG  CUG CAGGU UG GUUGAGAgc cgg   c
--g    agcuccaaacc    c       CC   -     C  A         -   ucu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

4: 136298651-136298760 [-]

Mature mml-miR-219-1-5p

• Accession: MIMAT0002575
• Description: Macaca mulatta mml-miR-219-1-5p mature miRNA
• Sequence: 21 - UGAUUGUCCAAACGCAAUUCUCG - 43
• Evidence: not_experimental

Mature mml-miR-219-1-3p

• Accession: MIMAT0061161
• Description: Macaca mulatta mml-miR-219-1-3p mature miRNA
• Sequence: 62 - AGAGUUGAGUCUGGACGUCCCGA - 84
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24