Stem-loop eca-mir-219a

Accession

MI0012846

Description

Equus caballus eca-mir-219a precursor miRNA

Sequence

4858 reads, 14.0 reads per million, 153 experiments

gggccgcggcucuUGAUUGUCCAAACGCAAUUCUCGagucucuggcuccggccgAGAGUUGAGUCUGGACGUCCCGagccgccgccc
((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))

Structure

    c       uU   U     A  G         a   ucu 
gggc gcggcuc  GAU GUCCA AC CAAUUCUCG guc   g
|||| |||||||  ||| ||||| || ||||||||| |||   g
cccg cgccgaG  CUG CAGGU UG GUUGAGAgc cgg   c
    c       CC   -     C  A         -   ccu 

Annotation confidence High

Genome context

20: 34558889-34558975 [+]

Mature eca-miR-219a-5p

• Accession: MIMAT0013099
• Description: Equus caballus eca-miR-219a-5p mature miRNA
• Sequence: 14 - UGAUUGUCCAAACGCAAUUCUCG - 36
• Evidence: not_experimental

Mature eca-miR-219a-3p

• Accession: MIMAT0051426
• Description: Equus caballus eca-miR-219a-3p mature miRNA
• Sequence: 55 - AGAGUUGAGUCUGGACGUCCCG - 76
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131