Stem-loop eca-mir-219-1

Accession

MI0012846

Description

Equus caballus eca-mir-219-1 precursor miRNA

Sequence

25 reads, 4 reads per million, 1 experiments

gggccgcggcucuUGAUUGUCCAAACGCAAUUCUcgagucucuggcuccggccgagaguugagucuggacgucccgagccgccgccc
((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))

Structure

    c       uU   U     A  G         a   ucu 
gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
|||| |||||||  ||| ||||| || ||||||||| |||   g
cccg cgccgag  cug caggu ug guugagagc cgg   c
    c       cc   -     c  a         -   ccu 

Annotation confidence Low

Genome context

chr20: 33649525-33649611 [+]

Mature eca-miR-219-5p

• Accession: MIMAT0013099
• Description: Equus caballus eca-miR-219-5p mature miRNA
• Sequence: 14 - UGAUUGUCCAAACGCAAUUCU - 34
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131